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- Major rewrite of atlas creation pipelines with modular step-based architecture
- Added GIFTI (
.label.gii) and CIFTI (.dlabel.nii) annotation support
- Added neuromaps surface and volume annotation pipelines
- Added whole-brain atlas creation from volumetric parcellations
- Added white-matter tract atlas creation from tractography files
- Added three-level verbosity control (silent/standard/debug)
- Deprecated
ggseg_atlas_repos(), install_ggseg_atlas(), and install_ggseg_atlas_all() in favour of ‘ggseg.hub’
- Moved
convert_legacy_brain_atlas() to ‘ggseg.formats’ (re-exported)
- Removed rgdal, purrr, reticulate, and tidyr dependencies
- Replaced reticulate/kaleido snapshots with chromote
- Protected all parallel operations against multicore fork crashes
- Removed dead FreeSurfer wrapper functions
- Fixed read_ctab for multi-word labels
- Fixed subcortical label classification in whole-brain pipeline
1.6.0
- Removed rgdal dependency, replaced with sf/terra (#49, #59)
- Fixed r-universe API calls (JSON array format change)
- Fixed vignette build issues with conditional evaluation for suggested packages
- Replaced reticulate/kaleido with webshot2 for plotly screenshots
- Updated system setup vignette with new requirements
- Added documentation for parallel processing and progress bars
- Added note about freesurfer dev version requirement
- Updated CITATION to use bibentry()
- Updated pkgdown site with ggseg brand styling
- Fixed mris_label2annot example documentation
1.5.33.003
- small bug fix that prevented calls to FreeSurfer
- Possibility to initiate new atlas project from the RStudio Project GUI
- removes purrr dependency
- used ggseg r-universe as install repo for install functions
- non-standard columns in 3d atlas are retained in 2d atlas
- Freesurfer annotation file custom S3 class implemented
- progressbar for region snapshots
- Added pipeline functions for:
- creating ggseg3d-atlas from annotation files
- creating ggseg3d-atlas from volumetric files
- creating ggseg-atlas from cortical ggseg3d-atlas
- creating ggseg-atlas from volumetric files
- Added a
NEWS.md file to track changes to the package.
